network.ports.plosone variable not resolving in plosone.xml for fedoragsearch urls

Russ, nothing has changed in this regard that I am aware of. What is missing?

there used to be a fedoragsearch section in the topaz block, but i don't see this section in defaults.xml, so i'm not sure if i can/should do the same thing?

    <fedoragsearch>
      <urls>
        <url>http://${hosts.plosone}:${ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort</url>
        <url>http://plostopaz01.localdomain:${ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort</url>
      </urls>
      <repository>Topaz</repository>
      <index>TopazIndex</index>
      <indexDocXslt>topazFoxmlToLucene</indexDocXslt>
      <resultPageXslt>copyXml</resultPageXslt>
      <fgsrepository>
        <fedoraSoap>${topaz.services.fedora.base-url}services</fedoraSoap>
        <fedoraUser>fedoraAdmin</fedoraUser>
        <fedoraPass>QjufL2Ky</fedoraPass>
      </fgsrepository>
    </fedoragsearch>

Russ, looks like Eric moved this from defaults.xml to global-defaults.xml in r3060, so yes, that means you can override it.

I believe you can override this in /etc/plosone.xml. Please see wiki:ConfigImplementation.

It was added in global-defaults.xml in r2830, but looks like an override still existing in defaults.xml. This was cleaned up in r3060. Looks like the configuration structure is still not easy to understand and maintain. We still have cleanup in the area.

hmm. okay, i'll try it.

do i need to define the whole section or can i just do the <urls> subsection and let the rest come from global-defaults?

    <fedoragsearch>
      <urls>
        <url>http://${hosts.plosone}:${ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort</url>
        <url>http://plostopaz01.localdomain:${ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort</url>
      </urls>
    </fedoragsearch>

i can't find a global-defaults.xml in /usr/local/topaz/plosone - is that normal?

[root@plostopaz01 plosone]# find . -name defaults.xml
./webapps/plosone-doi-resolver/WEB-INF/classes/org/plos/configuration/defaults.xml
./webapps/ROOT/WEB-INF/classes/org/plos/configuration/defaults.xml
[root@plostopaz01 plosone]# find . -name global-defaults.xml
[root@plostopaz01 plosone]#

sorry, i know i'm changing the subject, just curious...a

Russ, I believe you can override only the needed portion. So

    <fedoragsearch>
      <urls>
        <url>http://${hosts.plosone}:${ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort</url>
        <url>http://plostopaz01.localdomain:${ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort</url>
      </urls>
    </fedoragsearch>

should be fine.

global-defaults.xml is probably sitting within a jar file. I suspect conf-helper-0.8.xxx.jar. Yes, that is normal. Reason is that we don't expect users to edit that file, since all the information can be controlled via the top level plosone.xml file.

thanks! i'll pay close attention to lucene on our first live ingest with 0.8

nope, that didn't work.

here's what's in global-config.xml:

<fedoragsearch>
<urls>
<url>http://${network.hosts.plosone}:${network.ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort</url>
</urls>

i copied that into plosone.xml and added a second server:

<fedoragsearch>
<urls>
<url>http://${network.hosts.plosone}:${network.ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort</u\
rl>
<url>http://plostopaz02.localdomain:${network.ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort</ur\
l>
</urls>

here's what i get when we try to ingest:

Error ingesting: pone.0000922.zip - javax.xml.rpc.ServiceException: Invalid fedoragsearch URL 'http://plostopaz01.localdomain:${network.ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort' 
Error ingesting: pone.0000923.zip - javax.xml.rpc.ServiceException: Invalid fedoragsearch URL 'http://plostopaz01.localdomain:${network.ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort' 
Error ingesting: pone.0000924.zip - javax.xml.rpc.ServiceException: Invalid fedoragsearch URL 'http://plostopaz01.localdomain:${network.ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort' 
Error ingesting: pone.0000925.zip - javax.xml.rpc.ServiceException: Invalid fedoragsearch URL 'http://plostopaz01.localdomain:${network.ports.plosone}/ws-search-webapp/services/FedoraGenericSearchServicePort' 

sorry, i meant to say global-defaults.xml

we're happy after hard-coding the port numbers.

Fixed in r3798.

(In [3798]) Fix #649. Using CompositeConfiguration? for overrides is incorrect. CombinedConfiguration? with an OverrideCombiner? is what we need.

It used to work fine in 0.7 because we were using ConfigurationFactory? and that built the CompositeConfiguration? correctly (by doing the combining on its own instead of using the new NodeCombiner? concept).

Afraid this fix broke something else. I cannot bring up the publishing application anymore from head. Here is what the logs say:

2007-09-27 01:54:29,417 INFO  WebAppListener()> Loading 'file:/etc/topaz/plosone.xml' (file:///etc/topaz/plosone.xml) configured via default [main org.plos.configuration.WebAppListener]
2007-09-27 01:54:29,512 INFO  ConfigurationStore()> Added URL 'file:/etc/topaz/plosone.xml' [main org.plos.configuration.ConfigurationStore]
2007-09-27 01:54:29,513 INFO  ConfigurationStore()> Added 0 instances of resource 'org/plos/configuration/defaults.xml' to configuration [main org.plos.configuration.ConfigurationStore]
2007-09-27 01:54:29,527 INFO  ConfigurationStore()> Added resource '/org/plos/configuration/global-defaults.xml' [main org.plos.configuration.ConfigurationStore]
2007-09-27 01:54:30,803 INFO  WebAppListener()> Loading 'file:/etc/topaz/plosone.xml' (file:///etc/topaz/plosone.xml) configured via default [main org.plos.configuration.WebAppListener]
2007-09-27 01:54:30,936 INFO  ConfigurationStore()> Added URL 'file:/etc/topaz/plosone.xml' [main org.plos.configuration.ConfigurationStore]
2007-09-27 01:54:30,977 INFO  ConfigurationStore()> Added 1 instances of resource 'org/plos/configuration/defaults.xml' to configuration [main org.plos.configuration.ConfigurationStore]
2007-09-27 01:54:30,991 INFO  ConfigurationStore()> Added resource '/org/plos/configuration/global-defaults.xml' [main org.plos.configuration.ConfigurationStore]
2007-09-27 01:54:31,906 WARN  WebAppListenerInitModels()> bootstrap of models failed [main org.plos.bootstrap.WebAppListenerInitModels]
java.net.MalformedURLException: no protocol: ${topaz.services.itql.uri}
        at java.net.URL.<init>(URL.java:567)
        at java.net.URL.<init>(URL.java:464)
        at java.net.URL.<init>(URL.java:413)
        at org.topazproject.mulgara.itql.ItqlHelper.createStub(ItqlHelper.java:224)
        at org.topazproject.mulgara.itql.ItqlHelper.<init>(ItqlHelper.java:190)
        at org.plos.bootstrap.WebAppListenerInitModels.initModels(WebAppListenerInitModels.java:63)
        at org.plos.bootstrap.WebAppListenerInitModels.contextInitialized(WebAppListenerInitModels.java:51)

commons-config 1.3 has a bug related to subset(). Fixed in 1.4.

(In [3804]) Upgrade to commons-configuration 1.4. 1.4 fixes numerous bugs related to interpolation (variable substitution in configs) and also related to subset(). The full list of fixes are available at:

http://commons.apache.org/configuration/changes-report.html#Release1_4

This update brought the following changes in the war file composition for plosone:

commons-beanutils : changed from 1.4 to 1.7.0 commons-digestor : changed from 1.6 to 1.8

Also added tests to check subset() operations.

Closes #649

Milestone 0.8.1 deleted